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add median filter

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This commit is contained in:
Edward Emelianov
2021-08-24 12:19:52 +03:00
parent 9d76c96602
commit 4ef3ae7605
12 changed files with 206 additions and 126 deletions
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44
LocCorr/improc.c
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@@ -38,27 +38,16 @@
volatile atomic_ullong ImNumber = 0; // GLOBAL: counter of processed images
volatile atomic_bool stopwork = FALSE; // GLOBAL: suicide
//int autoExposition = 1; // GLOBAL: ==1 if exposition calculation is auto
// GLOBAL: function to get stepper server status
char *(*stepstatus)(const char *messageid, char *buf, int buflen) = NULL;
// GLOBAL: set new status
char *(*setstepstatus)(const char *newstatus, char *buf, int buflen) = NULL;
// GLOBAL: move focus
char *(*movefocus)(const char *newstatus, char *buf, int buflen) = NULL;
// GLOBAL: get image information
char *(*imagedata)(const char *messageid, char *buf, int buflen);
// GLOBAL: disconnect stepper server
void (*stepdisconnect)() = NULL;
char *(*imagedata)(const char *messageid, char *buf, int buflen) = NULL;
steppersproc *theSteppers = NULL;
static FILE *fXYlog = NULL;
static double tstart = 0.; // time of logging start
static double FPS = 0.; // frames per second
// function to process calculated corrections
static void (*proc_corr)(double, double) = NULL;
typedef struct{
uint32_t area; // object area in pixels
double Isum; // total object's intensity over background
@@ -150,16 +139,18 @@ static void getDeviation(object *curobj){
xx /= theconf.naverage; yy /= theconf.naverage;
Sx = sqrt(xsum2/theconf.naverage - xx*xx);
Sy = sqrt(ysum2/theconf.naverage - yy*yy);
green("\n\n\n Average centroid: X=%g (+-%g), Y=%g (+-%g)\n", xx, Sx, yy, Sy);
#ifdef EBUG
green("\n Average centroid: X=%g (+-%g), Y=%g (+-%g)\n", xx, Sx, yy, Sy);
#endif
LOGDBG("getDeviation(): Average centroid: X=%g (+-%g), Y=%g (+-%g)", xx, Sx, yy, Sy);
averflag = 1;
if(fXYlog) fprintf(fXYlog, "%.1f\t%.1f\t%.1f\t%.1f", xx, yy, Sx, Sy);
process_corrections:
if(proc_corr && averflag){
if(theSteppers && theSteppers->proc_corr && averflag){
if(Sx > XY_TOLERANCE || Sy > XY_TOLERANCE){
LOGDBG("Bad value - not process"); // don't run processing for bad data
}else
proc_corr(xx, yy);
theSteppers->proc_corr(xx, yy);
}
XYnewline();
}
@@ -248,21 +239,24 @@ void process_file(Image *I){
};
}
DELTA("Labeling");
printf("T%zd, N=%d\n", time(NULL), objctr);
DBG("T%zd, N=%d\n", time(NULL), objctr);
if(objctr > 1){
if(theconf.starssort)
qsort(Objects, objctr, sizeof(object), compIntens);
else
qsort(Objects, objctr, sizeof(object), compDist);
}
#ifdef EBUG
object *o = Objects;
green("%6s\t%6s\t%6s\t%6s\t%6s\t%6s\t%6s\t%6s\n",
"N", "Area", "Mv", "W/H", "Xc", "Yc", "Sx", "Sy");
green("%6s\t%6s\t%6s\t%6s\t%6s\t%6s\t%6s\t%6s\t%8s\n",
"N", "Area", "Mv", "W/H", "Xc", "Yc", "Sx", "Sy", "Area/r^2");
for(int i = 0; i < objctr; ++i, ++o){
// 1.0857 = 2.5/ln(10)
printf("%6d\t%6d\t%6.1f\t%6.1f\t%6.1f\t%6.1f\t%6.1f\t%6.1f\n",
i, o->area, 20.-1.0857*log(o->Isum), o->WdivH, o->xc, o->yc, o->xsigma, o->ysigma);
printf("%6d\t%6d\t%6.1f\t%6.1f\t%6.1f\t%6.1f\t%6.1f\t%6.1f\t%8.1f\n",
i, o->area, 20.-1.0857*log(o->Isum), o->WdivH, o->xc, o->yc,
o->xsigma, o->ysigma, o->area/o->xsigma/o->ysigma);
}
#endif
getDeviation(Objects); // calculate dX/dY and process corrections
{ // prepare image and save jpeg
uint8_t *outp = NULL;
@@ -381,11 +375,7 @@ void setpostprocess(const char *name){
WARNX("Pusiserver unavailable, will check later");
LOGWARN("Pusiserver unavailable, will check later");
}
stepdisconnect = pusi_stop;
proc_corr = pusi_process_corrections;
stepstatus = pusi_status;
setstepstatus = set_pusistatus;
movefocus = set_pfocus;
theSteppers = &pusyCANbus;
}else{
WARNX("Unknown postprocess \"%s\"", name);
LOGERR("Unknown postprocess \"%s\"", name);